Oct 31 , 15:30 - 16:30
MTBseq-nf: Enabling scalable Tuberculosis genomics “big data” analysis through a Nextflow Wrapper
MTBseq is one of the earliest publicly available pipelines for TB genomics and is widely used by the research community. However, its design limits the CPU usage to 8 threads. Using a Nextflow wrapper, we have achieved an optimization of at least 50% for large cohorts of TB genomics data, without altering the baseline tool.
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Davi Josué Marcon, Johannes Loubser, Robin M. Warren, Karla Valeria Batista Lima, Gian Van der Spuy, Emilyn Costa Conceição