Join us in Boston

This premier event brings together leading experts, innovators, and researchers to showcase the latest breakthroughs in workflow management.

Agenda

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09.00am

09:00 - 10:00

Registration and pastries

10.00am

10:00 - 10:30

Hackathon welcome

Hackathon room

10:00 - 10:30

Training welcome

Training room

10.30am

10:30 - 13:00

Hackathon: Session 1

Hackathon room

10:30 - 13:00

Training: Session 1

Training room

01.00pm

13:00 - 14:00

Lunch

02.00pm

14:00 - 16:25

Hackathon: Session 2

Hackathon room

14:00 - 16:25

Training: Session 2

Training room

04.25pm

16:25 - 17:00

Hackathon daily 1 sync

Hackathon room

16:25 - 17:00

Training day 1 review

Training room

06.00pm

18:00 - 21:00

Hackathon & training social event

09.00am

09:00 - 10:00

Arrivals and pastries

10.00am

10:00 - 13:00

Hackathon: Session 3

Hackathon room

10:00 - 13:00

Training: Session 3

Training room

01.00pm

13:00 - 14:00

Lunch

02.00pm

14:00 - 16:30

Hackathon: Session 4

Hackathon room

14:00 - 16:30

Training: Session 4

Training room

04.30pm

16:30 - 17:00

Hackathon wrap-up

Hackathon room

16:30 - 17:00

Training day 2 review

Training room

08.30am

08:30 - 09:30

Registrations and pastries

09.30am

09:30 - 09:45

Summit welcome

Evan Floden

09.45am

09:45 - 10:00

Constructing a quality control platform for plasmid verification

Jason Niehaus

10.00am

10:00 - 10:15

Parallelization of computer vision over large corpora of gigapixel biomedical images

Seamus Mawe

10.15am

10:15 - 10:30

Get into the Groovy: using Groovy to model sample sheets, input and metadata, and more

Jason Fan

Sponsor

10.30am

10:30 - 11:00

Community updates

Geraldine Van der Auwera

11.00am

11:00 - 11:30

Coffee break

11.30am

11:30 - 11:45

Innovation through Collaboration: Developing bioinformatic pipelines and sharing with nf-core

Andres Fernandez Benevento

Sponsor

11.45am

11:45 - 12:00

SpaFlow: A Nextflow pipeline for single cell phenotyping in spatial omics

Brenna Novotny

12.00pm

12:00 - 12:15

Mining diamonds with wooden hammers : getting diffusion MRI processing into the age of steel

Alex Valcourt Caron

Arnaud Boré

12.15pm

12:15 - 13:00

Making scientific software accessible to all

Evan Floden

01.00pm

13:00 - 14:00

Lunch

02.00pm

14:00 - 14:15

Cloud Empowerment: Unleashing the Potential of Memory Machine Cloud Snapshot Engine

Sateesh Peri

Sponsor

02.15pm

14:15 - 14:30

Perspective: Transitioning through the nf-core era at the Harvard Chan Bioinformatics Core

Lorena Pantano

02.30pm

14:30 - 14:45

Introduction to BioCompute and Integration with Nextflow

Jonathon Keeney

02.45pm

14:45 - 15:30

What’s new in the Nextflow ecosystem

Paolo Di Tommaso

03.30pm

15:30 - 16:00

Coffee break

04.00pm

16:00 - 16:15

Nextflow allows Pixelgen innovation engine to reach the market quicker

Alvaro Martinez Barrio

Sponsor

04.15pm

16:15 - 16:30

MultiQC: meet Plotly and notebooks

Vlad Savelyev

04.30pm

16:30 - 16:45

Using Nextflow to Orchestrate Tightly-coupled HPC Workloads on Rescale

Jeffrey Zhou

04.45pm

16:45 - 17:30

Breaking Bad Barriers: Overcoming challenges in Rare Cancer Research and Innovation

Corrie Painter

Keynote

05.30pm

17:30 - 20:00

Reception

07.00am

07:00 - 08:00

Morning run/walk

08.30am

08:30 - 09:30

Welcome sit-down breakfast

09.30am

09:30 - 09:45

Building Enterprise-Grade Bioinformatics Pipelines using Cloud-Scale Kubernetes

Colby T. Ford

09.45am

09:45 - 10:00

Nextflow In Synthetic Biology and Natural Product Discovery

Zachary Charlop-Powers

10.00am

10:00 - 10:15

Fastquorum: the fgbio best-practices for UMI-based consensus calling from raw FASTQs

Nils Homer

Sponsor

10.15am

10:15 - 10:30

Static Code Analysis of Nextflow Pipelines

Andrew Stiles

10.30am

10:30 - 11:00

What to know about and where to look for it when running Nextflow on the cloud

Angel Pizarro

Sponsor

11.00am

11:00 - 11:30

Coffee break

11.30am

11:30 - 12:00

Practical Data Studios

12.00pm

Diversifying the pipeline: Fostering first-gen success in biotech

Geraldine Van der Auwera

Edgardo Sanabria-Valentín

Irina Silva

Lyndon Mitnaul

12.45pm

12:45 - 13:00

Closing remarks

Evan Floden

Contact us

Ticketing questions

help.summit@nextflow.io

Program questions

summit@nextflow.io

Join us in Boston

Training | May 21-22

Hackathon | May 21-22

Summit | May 23-24

Agenda

Registration and pastries

Hackathon welcome

Training welcome

Hackathon: Session 1

Training: Session 1

Lunch

Hackathon: Session 2

Training: Session 2

Hackathon daily 1 sync

Training day 1 review

Hackathon & training social event

Arrivals and pastries

Hackathon: Session 3

Training: Session 3

Lunch

Hackathon: Session 4

Training: Session 4

Hackathon wrap-up

Training day 2 review

Registrations and pastries

Summit welcome

Constructing a quality control platform for plasmid verification

Parallelization of computer vision over large corpora of gigapixel biomedical images

Get into the Groovy: using Groovy to model sample sheets, input and metadata, and more

Community updates

Coffee break

Innovation through Collaboration: Developing bioinformatic pipelines and sharing with nf-core

SpaFlow: A Nextflow pipeline for single cell phenotyping in spatial omics

Mining diamonds with wooden hammers : getting diffusion MRI processing into the age of steel

Making scientific software accessible to all

Lunch

Cloud Empowerment: Unleashing the Potential of Memory Machine Cloud Snapshot Engine

Perspective: Transitioning through the nf-core era at the Harvard Chan Bioinformatics Core

Introduction to BioCompute and Integration with Nextflow

What’s new in the Nextflow ecosystem

Coffee break

Nextflow allows Pixelgen innovation engine to reach the market quicker

MultiQC: meet Plotly and notebooks

Using Nextflow to Orchestrate Tightly-coupled HPC Workloads on Rescale

Breaking Bad Barriers: Overcoming challenges in Rare Cancer Research and Innovation

Reception

Morning run/walk

Welcome sit-down breakfast

Building Enterprise-Grade Bioinformatics Pipelines using Cloud-Scale Kubernetes

Nextflow In Synthetic Biology and Natural Product Discovery

Fastquorum: the fgbio best-practices for UMI-based consensus calling from raw FASTQs

Static Code Analysis of Nextflow Pipelines

What to know about and where to look for it when running Nextflow on the cloud

Coffee break

Practical Data Studios

Diversifying the pipeline: Fostering first-gen success in biotech

Closing remarks

Contact us

Ticketing questions

Program questions