Join us in Boston
This premier event brings together leading experts, innovators, and
researchers to showcase the latest breakthroughs in workflow management.
Agenda
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08.30am
08:30 - 09:30
Registrations and pastries
09.30am
09:30 - 09:45
Evan Floden
Summit welcome
Evan Floden09.45am
09:45 - 10:00
Jason Niehaus
Constructing a quality control platform for plasmid verification
Jason Niehaus10.00am
10:00 - 10:15
Seamus Mawe
Parallelization of computer vision over large corpora of gigapixel biomedical images
Seamus Mawe10.15am
10:15 - 10:30
Jason Fan
Get into the Groovy: using Groovy to model sample sheets, input and metadata, and more
Jason Fan10.30am
10:30 - 11:00
Geraldine Van der Auwera
Community updates
Geraldine Van der Auwera11.00am
11:00 - 11:30
Coffee break
11.30am
11:30 - 11:45
Andres Fernandez Benevento
Innovation through Collaboration: Developing bioinformatic pipelines and sharing with nf-core
Andres Fernandez Benevento11.45am
11:45 - 12:00
Brenna Novotny
SpaFlow: A Nextflow pipeline for single cell phenotyping in spatial omics
Brenna Novotny12.00pm
12:00 - 12:15
Alex Valcourt Caron
Mining diamonds with wooden hammers : getting diffusion MRI processing into the age of steel
Alex Valcourt Caron12.15pm
12:15 - 13:00Evan Floden
Making scientific software accessible to all
Evan Floden01.00pm
13:00 - 14:00
Lunch
02.00pm
14:00 - 14:15
Sateesh Peri
Cloud Empowerment: Unleashing the Potential of Memory Machine Cloud Snapshot Engine
Sateesh Peri02.15pm
14:15 - 14:30
Lorena Pantano
Perspective: Transitioning through the nf-core era at the Harvard Chan Bioinformatics Core
Lorena Pantano02.30pm
14:30 - 14:45
Jonathon Keeney
Introduction to BioCompute and Integration with Nextflow
Jonathon Keeney02.45pm
14:45 - 15:30
Paolo Di Tommaso
What’s new in the Nextflow ecosystem
Paolo Di Tommaso03.30pm
15:30 - 16:00
Coffee break
04.00pm
16:00 - 16:15
Alvaro Martinez Barrio
Nextflow allows Pixelgen innovation engine to reach the market quicker
Alvaro Martinez Barrio04.15pm
16:15 - 16:30
Vlad Savelyev
MultiQC: meet Plotly and notebooks
Vlad Savelyev04.30pm
16:30 - 16:45
Jeffrey Zhou
Using Nextflow to Orchestrate Tightly-coupled HPC Workloads on Rescale
Jeffrey Zhou04.45pm
16:45 - 17:30
Corrie Painter
Breaking Bad Barriers: Overcoming challenges in Rare Cancer Research and Innovation
Corrie Painter05.30pm
17:30 - 20:00
Reception
07.00am
07:00 - 08:00
Morning run/walk
08.30am
08:30 - 09:30
Arrivals and breakfast
09.30am
09:30 - 09:45
Colby T. Ford
Building Enterprise-Grade Bioinformatics Pipelines using Cloud-Scale Kubernetes
Colby T. Ford09.45am
09:45 - 10:00
Zachary Charlop-Powers
Nextflow In Synthetic Biology and Natural Product Discovery
Zachary Charlop-Powers10.00am
10:00 - 10:15
Nils Homer
Fastquorum: the fgbio best-practices for UMI-based consensus calling from raw FASTQs
Nils Homer10.15am
10:15 - 10:30
Andrew Stiles
Static Code Analysis of Nextflow Pipelines
Andrew Stiles10.30am
10:30 - 11:00
Angel Pizarro
What to know about and where to look for it when running Nextflow on the cloud
Angel Pizarro11.00am
11:00 - 11:30
Coffee break
11.30am
11:30 - 12:00
Rob Syme
Practical Data Studios
Rob Syme12.00pm
12:00 - 12:45Geraldine Van der Auwera
Edgardo Sanabria-Valentín
Irina Silva
Lyndon Mitnaul
Diversifying the pipeline: Fostering first-gen success in biotech
Geraldine Van der AuweraEdgardo Sanabria-ValentínIrina SilvaLyndon Mitnaul12.45pm
12:45 - 13:00Evan Floden
Closing remarks
Evan Floden
