Nextflow Summit 2024 Barcelona - Agenda

Monday, Oct 28

09.00 am

09:00 - 10:00

Hackathon and Training: Registration and arrivals

10.00 am

10:00 - 10:30

Hackathon welcome

Hackathon room

10:00 - 10:30

Training welcome

Training room

10.30 am

10:30 - 13:00

Hackathon: Session 1

Hackathon room

10:30 - 13:00

Training: Session 1

Training room

01.00 pm

13:00 - 14:00

Hackathon and Training: Lunch

02.00 pm

14:00 - 16:45

Hackathon: Session 2

Hackathon room

14:00 - 16:45

Training: Session 2

Training room

04.45 pm

16:45 - 17:20

Hackathon: Day 1 sync

Hackathon room

16:45 - 17:20

Training: Day 1 review

Training room

06.00 pm

18:00 - 21:00

Hackathon and Training: Social event at Hard Rock Café

Tuesday, Oct 29

09.30 am

09:30 - 10:00

Hackathon and Training: Arrivals

10.00 am

10:00 - 13:00

Hackathon: Session 3

Hackathon room

10:00 - 13:00

Training: Session 3

Training room

01.00 pm

13:00 - 14:00

Hackathon and Training: Lunch

02.00 pm

14:00 - 14:15

Hackathon and Training: Quiz

02.15 pm

14:15 - 17:00

Hackathon: Session 4

Hackathon room

14:15 - 17:00

Training: Session 4

Training room

05.00 pm

17:00 - 17:30

Hackathon: Day 2 sync

Hackathon room

17:00 - 17:30

Training: Day 2 review

Training room

Wednesday, Oct 30

09.30 am

09:30 - 10:00

Hackathon and Training: Arrivals

10.00 am

10:00 - 12:30

Hackathon: Session 5

Hackathon room

10:00 - 12:30

Training: Session 5

Training room

12.30 pm

12:30 - 13:00

Hackathon: Wrap-up

Hackathon room

12:30 - 13:00

Training: Wrap-up

Training room

01.00 pm

13:00 - 14:00

Hackathon and Training: Lunch

02.00 pm

14:00 - 15:00

Summit: Arrivals and registration

03.00 pm

15:00 - 15:15

Summit welcome

Evan Floden

03.15 pm

15:15 - 15:30

Integrated metagenomic data processing with nf-core

James A. Fellows Yates

03.30 pm

15:30 - 15:45

Improving the reliability and quality of Nextflow pipelines with nf-test

Lukas Forer

03.45 pm

15:45 - 16:00

Implementing nf-core/rnafusion in a clinical setting: Key insights and lessons learned

Annick Renevey

04.00 pm

16:00 - 16:15

The Australian ProteinFold service: Interactive prediction and visualisation of protein structure

Ziad Al Bkhetan

04.15 pm

16:15 - 16:30

Updates from the Nextflow community

Geraldine Van der Auwera

04.30 pm

16:30 - 17:00

Summit: Coffee break

05.00 pm

17:00 - 17:15

Molecular Pixelation: 3D representation of single-cells without a microscope

Alvaro Martinez Barrio

Sponsor

05.15 pm

17:15 - 18:00

Towards environmentally sustainable computational science with Green Algorithms

Loïc Lannelongue

Keynote

Thursday, Oct 31

07.30 am

07:30 - 08:15

Summit: Run & Walk

09.00 am

09:00 - 09:30

Summit: Arrivals

09.30 am

09:30 - 09:45

CLIMB-TRE: Nextflow powered analysis of public health big data in a trusted research environment

Sam Wilkinson

09.45 am

09:45 - 10:00

Leveraging Nextflow for the development of FAIR-compliant somatic variant calling workflows

Kübra Narcı

View poster online

10.00 am

10:00 - 10:15

Empowering bioinformatics communities with Nextflow and nf-core

Björn Langer

10.15 am

10:15 - 10:30

Scaling Seqera Platform: How we're building the modern biotech stack

Stacy Gorelik

10.30 am

10:30 - 11:00

Making Nextflow run smoother: What we’ve cooked up with Seqera

11.00 am

Summit: Coffee break

11.30 am

11:30 - 11:45

Advancing open science in big pharma: Integrating LIMMA/VOOM into the nf-core differential abundance

Kamil Malisz

Sponsor

11.45 am

11:45 - 12:00

MultiQC: New features and flexible data parsing

Phil Ewels

12.00 pm

12:00 - 12:15

Announcing nf-core/tools v3

Júlia Mir-Pedrol

12.15 pm

12:15 - 13:00

Solving the 'blank page problem' in bioinformatics

Evan Floden

01.00 pm

13:00 - 14:00

Summit: Lunch

02.00 pm

14:00 - 14:15

How to NOT contribute to nf-core: Best practices for using nf-core tooling in closed-source contexts

Ken Brewer

02.15 pm

14:15 - 14:30

#regulatory - The nf-core special interest group for clinical applications

Alexander Peltzer

02.30 pm

14:30 - 14:45

Integrated CRISPR-Cas9 analysis pipeline for targeted and screening genomics

Laurence Kuhlburger

02.45 pm

14:45 - 15:30

What’s next for Nextflow: New features and roadmap for the future

Paolo Di Tommaso

Ben Sherman

03.30 pm

15:30 - 16:30

Summit: Coffee break & poster session

04.30 pm

16:30 - 16:45

Bioinformatics beyond the basement

Chris Wright

Sponsor

04.45 pm

16:45 - 17:00

Michigan Imputation Server: Migrating an important resource for human genetics to Nextflow

Sebastian Schönherr

05.00 pm

17:00 - 17:15

STIMULUS : A nextflow-based pipeline for training deep learning models

Mathys Grapotte

05.15 pm

17:15 - 17:30

Advancing precision medicine and infectious disease surveillance using nf-nomad plugin for Nextflow

Abhinav Sharma

Tom Sante

05.30 pm

17:30 - 18:00

Updates from the nf-core ecosystem

Phil Ewels

08.00 pm

20:00 - 20:30

Shuttle to Summit social

08.30 pm

20:30 - 00:00

Summit social

Friday, Nov 01

09.00 am

09:00 - 09:30

Summit: Arrivals

09.30 am

09:30 - 09:45

Unifying Nextflow pipeline outputs and biological metadata with SQL and schema-on-read databases

Laura Richards

Kevin Moore

09.45 am

09:45 - 10:00

Nextflow in the classroom: Innovating bioinformatics education in life sciences.

Francesco Lescai

10.00 am

10:00 - 10:15

MGnify's Nextflow journey

Martin Beracochea

10.15 am

10:15 - 10:30

Seamless deployment and benchmark of multiple sequence aligners with nf-core/multiplesequencealign

Luisa Santus

10.30 am

10:30 - 10:45

Genie: Powering Genomics England's Newborns Generation Study

Edwin Clark

10.45 am

10:45 - 11:00

Accelerated compute and AI in genomics

Harry Clifford

Sponsor

11.00 am

11:00 - 11:30

Summit: Coffee break

11.30 am

11:30 - 12:00

Exciting new updates from Seqera

Rob Syme

12.00 pm

12:00 - 12:45

Navigating the career graph: Paths to success in Bioinformatics outside academia

Geraldine Van der Auwera

12.45 pm

12:45 - 13:00

Summit: Close

Nextflow Summit 2024 Barcelona - Agenda

Monday, Oct 28

Hackathon and Training: Registration and arrivals

Hackathon welcome

Training welcome

Hackathon: Session 1

Training: Session 1

Hackathon and Training: Lunch

Hackathon: Session 2

Training: Session 2

Hackathon: Day 1 sync

Training: Day 1 review

Hackathon and Training: Social event at Hard Rock Café

Tuesday, Oct 29

Hackathon and Training: Arrivals

Hackathon: Session 3

Training: Session 3

Hackathon and Training: Lunch

Hackathon and Training: Quiz

Hackathon: Session 4

Training: Session 4

Hackathon: Day 2 sync

Training: Day 2 review

Wednesday, Oct 30

Hackathon and Training: Arrivals

Hackathon: Session 5

Training: Session 5

Hackathon: Wrap-up

Training: Wrap-up

Hackathon and Training: Lunch

Summit: Arrivals and registration

Summit welcome

Integrated metagenomic data processing with nf-core

Improving the reliability and quality of Nextflow pipelines with nf-test

Implementing nf-core/rnafusion in a clinical setting: Key insights and lessons learned

The Australian ProteinFold service: Interactive prediction and visualisation of protein structure

Updates from the Nextflow community

Summit: Coffee break

Molecular Pixelation: 3D representation of single-cells without a microscope

Towards environmentally sustainable computational science with Green Algorithms

Thursday, Oct 31

Summit: Run & Walk

Summit: Arrivals

CLIMB-TRE: Nextflow powered analysis of public health big data in a trusted research environment

Leveraging Nextflow for the development of FAIR-compliant somatic variant calling workflows

Empowering bioinformatics communities with Nextflow and nf-core

Scaling Seqera Platform: How we're building the modern biotech stack

Making Nextflow run smoother: What we’ve cooked up with Seqera

Summit: Coffee break

Advancing open science in big pharma: Integrating LIMMA/VOOM into the nf-core differential abundance

MultiQC: New features and flexible data parsing

Announcing nf-core/tools v3

Solving the 'blank page problem' in bioinformatics

Summit: Lunch

How to NOT contribute to nf-core: Best practices for using nf-core tooling in closed-source contexts

#regulatory - The nf-core special interest group for clinical applications

Integrated CRISPR-Cas9 analysis pipeline for targeted and screening genomics

What’s next for Nextflow: New features and roadmap for the future

Summit: Coffee break & poster session

Bioinformatics beyond the basement

Michigan Imputation Server: Migrating an important resource for human genetics to Nextflow

STIMULUS : A nextflow-based pipeline for training deep learning models

Advancing precision medicine and infectious disease surveillance using nf-nomad plugin for Nextflow

Updates from the nf-core ecosystem

Shuttle to Summit social

Summit social

Friday, Nov 01

Summit: Arrivals

Unifying Nextflow pipeline outputs and biological metadata with SQL and schema-on-read databases

Nextflow in the classroom: Innovating bioinformatics education in life sciences.

MGnify's Nextflow journey

Seamless deployment and benchmark of multiple sequence aligners with nf-core/multiplesequencealign

Genie: Powering Genomics England's Newborns Generation Study

Accelerated compute and AI in genomics

Summit: Coffee break

Exciting new updates from Seqera

Navigating the career graph: Paths to success in Bioinformatics outside academia

Summit: Close

Contact us

Ticketing questions