Nextflow SUMMIT 2024

Nextflow Summit 2024 Barcelona - Agenda

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Monday, Oct 28

09.00 am
09:00 - 10:00

Hackathon and Training: Registration and arrivals

10.00 am
10:00 - 10:30

Hackathon welcome

Hackathon room
10:00 - 10:30

Training welcome

Training room
10.30 am
10:30 - 13:00

Hackathon: Session 1

Hackathon room
10:30 - 13:00

Training: Session 1

Training room
01.00 pm
13:00 - 14:00

Hackathon and Training: Lunch

02.00 pm
14:00 - 16:45

Hackathon: Session 2

Hackathon room
14:00 - 16:45

Training: Session 2

Training room
04.45 pm
16:45 - 17:20

Hackathon: Day 1 sync

Hackathon room
16:45 - 17:20

Training: Day 1 review

Training room
06.00 pm
18:00 - 21:00

Hackathon and Training: Social event

Tuesday, Oct 29

09.00 am
09:00 - 10:00

Hackathon and Training: Arrivals

10.00 am
10:00 - 13:00

Hackathon: Session 3

Hackathon room
10:00 - 13:00

Training: Session 3

Training room
01.00 pm
13:00 - 14:00

Hackathon and Training: Lunch

02.00 pm
14:00 - 17:00

Hackathon: Session 4

Hackathon room
14:00 - 17:00

Training: Session 4

Training room
05.00 pm
17:00 - 17:30

Hackathon: Day 2 sync

Hackathon room
17:00 - 17:30

Training: Day 2 review

Training room

Wednesday, Oct 30

09.00 am
09:00 - 10:00

Hackathon and Training: Arrivals

10.00 am
10:00 - 12:30

Hackathon: Session 5

Hackathon room
10:00 - 12:30

Training: Session 5

Training room
12.30 pm
12:30 - 13:00

Hackathon: Wrap-up

Hackathon room
12:30 - 13:00

Training: Wrap-up

Training room
01.00 pm
13:00 - 14:00

Hackathon and Training: Lunch

02.00 pm
14:00 - 15:00

Summit: Arrivals and registration

03.00 pm
15:00 - 15:15

Summit welcome

Evan FlodenEvan Floden
03.15 pm
15:15 - 15:30

Integrated metagenomic data processing with nf-core

James A. Fellows YatesJames A. Fellows Yates
03.30 pm
15:30 - 15:45

Improving the reliability and quality of Nextflow pipelines with nf-test

Lukas ForerLukas Forer
03.45 pm
15:45 - 16:00

Implementing nf-core/rnafusion in a clinical setting: Key insights and lessons learned

Annick ReneveyAnnick Renevey
04.00 pm
16:00 - 16:15

The Australian ProteinFold service: Interactive prediction and visualisation of protein structure

Ziad Al BkhetanZiad Al Bkhetan
04.15 pm
16:15 - 16:30

Updates from the Nextflow community

Geraldine Van der AuweraGeraldine Van der Auwera
04.30 pm
16:30 - 17:00

Summit: Coffee break

05.00 pm
17:00 - 17:15

Molecular Pixelation: 3D representation of single-cells without a microscope

Alvaro Martinez BarrioAlvaro Martinez Barrio
Sponsor
05.15 pm
17:15 - 18:00

Towards environmentally sustainable computational science with Green Algorithms

Loïc LannelongueLoïc Lannelongue
Keynote

Thursday, Oct 31

09.00 am
09:00 - 09:30

Summit: Arrivals

09.30 am
09:30 - 09:45

CLIMB-TRE: Nextflow powered analysis of public health big data in a trusted research environment

Sam WilkinsonSam Wilkinson
09.45 am
09:45 - 10:00

Leveraging Nextflow for the development of FAIR-compliant somatic variant calling Workflows

Kübra NarcıKübra Narcı
10.00 am
10:00 - 10:15

Empowering bioinformatics communities with Nextflow and nf-core

Björn LangerBjörn Langer
10.15 am
10:15 - 10:30

Scaling Seqera Platform: How we're building the modern biotech stack

Stacy GorelikStacy Gorelik
10.30 am
10:30 - 11:00

Sponsor talk: AWS

11.00 am
11:00 - 11:30

Summit: Coffee break

11.30 am
11:30 - 11:45

Advancing open science in big pharma: Integrating LIMMA/VOOM into the nf-core differential abundance

Kamil MaliszKamil Malisz
Sponsor
11.45 am
11:45 - 12:00

Community talk: TBC

12.00 pm
12:00 - 12:15

Announcing nf-core/tools v3

Júlia Mir-PedrolJúlia Mir-Pedrol
12.15 pm
12:15 - 13:00

Solving the 'blank page problem' in bioinformatics

Evan FlodenEvan Floden
01.00 pm
13:00 - 14:00

Summit: Lunch

02.00 pm
14:00 - 14:15

Community talk: TBC

02.15 pm
14:15 - 14:30

#regulatory - The nf-core special interest group for clinical applications

Alexander PeltzerAlexander Peltzer
02.30 pm
14:30 - 14:45

Versatile and scalable computational analyses of CRISPR-based functional genomics enables efficient

Laurence KuhlburgerLaurence Kuhlburger
02.45 pm
14:45 - 15:30

What’s next for Nextflow: New features and roadmap for the future

Paolo Di TommasoPaolo Di Tommaso
03.30 pm
15:30 - 16:30

Summit: Coffee break & poster session

04.30 pm
16:30 - 16:45

Bioinformatics beyond the basement

Chris WrightChris Wright
Sponsor
04.45 pm
16:45 - 17:00

Michigan Imputation Server: Migrating an important resource for human genetics to Nextflow

Sebastian SchönherrSebastian Schönherr
05.00 pm
17:00 - 17:15

STIMULUS : A nextflow-based pipeline for training deep learning models

Mathys GrapotteMathys Grapotte
05.15 pm
17:15 - 17:30

Advancing precision medicine and infectious disease surveillance using nf-nomad plugin for Nextflow

Abhinav SharmaAbhinav Sharma
05.30 pm
17:30 - 18:00

Updates from the nf-core ecosystem

Phil EwelsPhil Ewels
08.00 pm
20:00 - 20:30

Shuttle to Summit social

08.30 pm
20:30 - 00:00

Summit social

Friday, Nov 01

09.00 am
09:00 - 09:30

Summit: Arrivals

09.30 am
09:30 - 09:45

Unifying Nextflow pipeline outputs and biological metadata with SQL and schema-on-read databases

Kevin MooreKevin MooreLaura RichardsLaura Richards
09.45 am
09:45 - 10:00

Nextflow in the classroom: Innovating bioinformatics education in life sciences.

Francesco LescaiFrancesco Lescai
10.00 am
10:00 - 10:15

MGnify's Nextflow journey

Martin BeracocheaMartin Beracochea
10.15 am
10:15 - 10:30

Seamless deployment and benchmark of multiple sequence aligners with nf-core/multiplesequencealign

Luisa SantusLuisa Santus
10.30 am
10:30 - 11:00

Sponsor talk: TBC

11.00 am
11:00 - 11:30

Summit: Coffee break

11.30 am
11:30 - 12:00

Exciting new updates from Seqera

Harshil PatelHarshil Patel
12.00 pm
12:00 - 12:45

Career paths in bioinformatics (panel)

12.45 pm
12:45 - 13:00

Summit: Close

Seqera
AWS
Pixelgen
Oxford Nanopore Technologies
Element Biosciences
Ardigen
Quilt
ZS Discovery
Seqera
AWS
Pixelgen
Oxford Nanopore Technologies
Element Biosciences
Ardigen
Quilt
ZS Discovery