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Building the Flomics bioinformatics infrastructure from the ground up

#1Building the Flomics bioinformatics infrastructure from the ground up

Ecosystem
Cristina Tuñí i Domínguez
Cristina Tuñí i Domínguez
nf-core/proteinfold: a bioinformatics best-practice pipeline for protein 3D structure prediction

#2nf-core/proteinfold: a bioinformatics best-practice pipeline for protein 3D structure prediction

Community
Athanasios Baltzis
Athanasios Baltzis
atlas: a novel Nextflow quality control pipeline for a plethora of mass spectrometry workflows

#3atlas: a novel Nextflow quality control pipeline for a plethora of mass spectrometry workflows

Community
Roger Olivella
Roger Olivella
Enhancing pathogen surveillance of Candida auris using MycoSNP and Nextflow: an update

#4Enhancing pathogen surveillance of Candida auris using MycoSNP and Nextflow: an update

Community
Hunter Seabolt
Hunter Seabolt
sagetasks: a Python package for data and workflow orchestration in the cloud

#5sagetasks: a Python package for data and workflow orchestration in the cloud

Ecosystem
Bruno Grande
Bruno Grande
Efficient parallel taxonomic profiling for metagenomics with nf-core/taxprofiler

#6Efficient parallel taxonomic profiling for metagenomics with nf-core/taxprofiler

Community
James Fellows Yates
James Fellows Yates
nf-core/funcscan: Identifying natural products and functional gene clusters in ancient microbial DNA

#7nf-core/funcscan: Identifying natural products and functional gene clusters in ancient microbial DNA

Community
Jasmin Frangenberg
Jasmin Frangenberg
nf-core as the standard for BovReg reference pipelines

#8nf-core as the standard for BovReg reference pipelines

Community
Björn Langer
Björn Langer
An Overview of Bioinformatic pipelines for metabarcoding data analyses

#9An Overview of Bioinformatic pipelines for metabarcoding data analyses

Software
Ali Hakimzadeh
Ali Hakimzadeh
Computational analysis of single cell data with the nf-core workflows scrnaseq 2.0 and scatac

#10Computational analysis of single cell data with the nf-core workflows scrnaseq 2.0 and scatac

Software
Florian Heyl
Florian Heyl
GHGA - A national infrastructure for secure archival and community-driven analysis of omics data

#11GHGA - A national infrastructure for secure archival and community-driven analysis of omics data

Community
Kübra Narcı
Kübra Narcı
NextITS: a pipeline for metabarcoding fungi with full-length ITS sequenced with PacBio

#12NextITS: a pipeline for metabarcoding fungi with full-length ITS sequenced with PacBio

Community
Vladimir Mikryukov
Vladimir Mikryukov
PhyloNext: a pipeline for phylogenetic diversity analysis of GBIF-mediated data in the cloud

#13PhyloNext: a pipeline for phylogenetic diversity analysis of GBIF-mediated data in the cloud

Community
Vladimir Mikryukov
Vladimir Mikryukov
Flow - The Open, Nextflow-Based, Sequencing Analysis Platform

#14Flow - The Open, Nextflow-Based, Sequencing Analysis Platform

Software
Sam Ireland
Sam Ireland
A computationally efficient system for improving SARS-CoV-2 sequencing surveillance

#15A computationally efficient system for improving SARS-CoV-2 sequencing surveillance

Community
Marcello Salvi
Marcello Salvi
nf-core mentorship: From wet lab to DSL2

#16nf-core mentorship: From wet lab to DSL2

Community
Suchitra Thapa
Suchitra Thapa
CRISPR-Analytics (CRISPR-A): a platform for precise analytics and simulations for gene editing

#17CRISPR-Analytics (CRISPR-A): a platform for precise analytics and simulations for gene editing

Community
Marta Sanvicente García
Marta Sanvicente García
Leveraging Nextflow and Bactopia for automated plant pathogen characterization

#18Leveraging Nextflow and Bactopia for automated plant pathogen characterization

Community
Zachary Foster
Zachary Foster
One Link to Rule Them All

#19One Link to Rule Them All

Ecosystem
Ernest Prabhakar
Ernest Prabhakar
nf-core/sarek: A workflow for germline, tumor-only, and somatic analysis of NGS data

#20nf-core/sarek: A workflow for germline, tumor-only, and somatic analysis of NGS data

Community
Friederike Hanssen
Friederike Hanssen
nf-core/airrflow: A pipeline to analyze Adaptive Immune Receptor Repertoires (AIRRs)

#21nf-core/airrflow: A pipeline to analyze Adaptive Immune Receptor Repertoires (AIRRs)

Community
Gisela Gabernet
Gisela Gabernet